Class: Bio::Graphics::SubFeature

External Aliases

label	->	name
locations	->	location

Attributes

chopped_at_start	[RW]	Is the first subfeature incomplete?
chopped_at_stop	[RW]	Is the last subfeature incomplete?
colour	[RW]	The colour to use to draw this (sub)feature
feature	[RW]	The feature that this subfeature belongs to
feature_object	[RW]	The bioruby Bio::Feature object
glyph	[RW]	The glyph to use to draw this (sub)feature
hidden_subfeatures_at_start	[RW]	Are there subfeatures out of view at the left side of the picture?
hidden_subfeatures_at_stop	[RW]	Are there subfeatures out of view at the right side of the picture?
label	[RW]	The label of the feature
locations	[RW]	The locations of the feature (which is a Bio::Locations object)
pixel_range_collection	[RW]	The array keeping the pixel ranges for the sub-features. Unspliced features will just have one element, while spliced features will have more than one.
start	[RW]	The start position of the feature (in bp)
stop	[RW]	The stop position of the feature (in bp)
strand	[RW]	The strand of the feature

Public Class methods

new(feature, feature_object, opts = {})

!!Not to be used directly.

Arguments:

feature (required) :: Bio::Graphics::Feature object that this subfeature belongs to
feature object (required) :: A Bio::Feature object (see bioruby)
:glyph :: Glyph to use. Default = glyph of the track
:colour :: Colour. Default = colour of the track

Returns:

Bio::Graphics::SubFeature object

Public Instance methods

draw(feature_context)

Adds the subfeature to the track cairo context. This method should not be used directly by the user, but is called by Bio::Graphics::Feature::SubFeature.draw